Difference between revisions of "CLCbio Genomics Workbench"
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|bio domain=Genomics, Whole Genome Resequencing, De-novo assembly, SNP discovery, InDel discovery, ChIP-Seq, InDel discovery, RNA-Seq, | |bio domain=Genomics, Whole Genome Resequencing, De-novo assembly, SNP discovery, InDel discovery, ChIP-Seq, InDel discovery, RNA-Seq, | ||
|bio method=Mapping, Assembly, Alignments, command line tool wrappers, genetic variation annotation, Statistics, Visualisation, | |bio method=Mapping, Assembly, Alignments, command line tool wrappers, genetic variation annotation, Statistics, Visualisation, | ||
| − | |bio tech=454, | + | |bio tech=454, Illumina, ABI Solid, Helicos, Sanger, |
|created by=Thomas Knudsen and Bjarne Knudsen et al | |created by=Thomas Knudsen and Bjarne Knudsen et al | ||
|created at=CLC bio | |created at=CLC bio | ||
Revision as of 20:46, 13 January 2010
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Application data |
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| Created by | Thomas Knudsen and Bjarne Knudsen et al |
|---|---|
| Biological application domain(s) | Genomics, Whole Genome Resequencing, De-novo assembly, SNP discovery, InDel discovery, ChIP-Seq, InDel discovery, RNA-Seq |
| Principal bioinformatics method(s) | Mapping, Assembly, Alignments, command line tool wrappers, genetic variation annotation, Statistics, Visualisation |
| Technology | 454, Illumina, ABI Solid, Helicos, Sanger |
| Created at | CLC bio |
| Maintained? | Yes |
| Input format(s) | FASTA, FASTQ, A reference genome sequence in fasta format, GenBank, SAM, Illumina Bustard, ELAND, CSFASTA/CSQUAL (ABI SOLiD), and many more. |
| Output format(s) | FASTA, FASTQ, GFF, GenBank, Nexus, and more |
| Software features | Advanced and user-friendly analyses of genomic, transcriptomic and epigenomic NGS data in a graphical user-interface |
| Programming language(s) | Java, C++ |
| Licence | Perpetual, temporal, Free trial license |
| Operating system(s) | Windows, Mac OS X, Linux |
Summary: de novo and reference assembly of Sanger, 454, Solexa, Helicos, and SOLiD data. Commercial next-gen-seq software that extends the CLCbio Main Workbench software. Includes SNP detection, browser and other features. Runs on Windows, Mac OS X and Linux.
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Link: http://www.clcbio.com/index.php?id=1240 Category: Integrated solutions
