Difference between revisions of "CLCbio Genomics Workbench"
m |
|||
| Line 1: | Line 1: | ||
{{Bioinformatics application | {{Bioinformatics application | ||
| − | |sw summary= | + | |sw summary=De novo and reference assembly of Sanger, 454, Solexa, Helicos, and SOLiD data. Alignment in base- and color-space, and mixed mode. Support for paired and single reads. Includes tools for SNP and small indel detection and annotation. Runs on Windows, Mac OS X and Linux. |
| − | |bio domain=Genomics, Whole Genome Resequencing, De-novo assembly, SNP discovery, InDel discovery, ChIP-Seq | + | |bio domain=Genomics, Whole Genome Resequencing, De-novo assembly, SNP discovery, InDel discovery, ChIP-Seq, RNA-Seq and much more... |
| − | |bio method=Mapping, Assembly, Alignments, | + | |bio method=Mapping, Assembly, Alignments, BLAST, wrappers, genetic variation annotation, Statistics, Visualisation, |
|bio tech=454, Illumina, ABI Solid, Helicos, Sanger, | |bio tech=454, Illumina, ABI Solid, Helicos, Sanger, | ||
|created by=Thomas Knudsen and Bjarne Knudsen et al | |created by=Thomas Knudsen and Bjarne Knudsen et al | ||
| − | |created at= | + | |created at=http://www.clcbio.com |
|maintained=Yes | |maintained=Yes | ||
| − | |input format=FASTA, FASTQ, A reference genome sequence in fasta format, GenBank, SAM, Illumina Bustard, ELAND, CSFASTA/CSQUAL (ABI SOLiD), and many more. | + | |input format=FASTA, FASTQ, A reference genome sequence in fasta format, GenBank, SAM, Illumina Bustard, ELAND, CSFASTA/CSQUAL (ABI SOLiD), and many more. |
|output format=FASTA, FASTQ, GFF, GenBank, Nexus, and more | |output format=FASTA, FASTQ, GFF, GenBank, Nexus, and more | ||
|sw feature=Advanced and user-friendly analyses of genomic, transcriptomic and epigenomic NGS data in a graphical user-interface | |sw feature=Advanced and user-friendly analyses of genomic, transcriptomic and epigenomic NGS data in a graphical user-interface | ||
|language=Java, C++ | |language=Java, C++ | ||
| − | |licence=Perpetual, temporal, Free trial license | + | |licence=Perpetual, temporal, Free trial license, floating network and terminal server |
|os=Windows, Mac OS X, Linux, | |os=Windows, Mac OS X, Linux, | ||
}} | }} | ||
Link: http://www.clcbio.com/index.php?id=1240 Category: Integrated solutions | Link: http://www.clcbio.com/index.php?id=1240 Category: Integrated solutions | ||
Revision as of 00:47, 14 January 2010
|
Application data |
|
| Created by | Thomas Knudsen and Bjarne Knudsen et al |
|---|---|
| Biological application domain(s) | Genomics, Whole Genome Resequencing, De-novo assembly, SNP discovery, InDel discovery, ChIP-Seq, RNA-Seq and much more... |
| Principal bioinformatics method(s) | Mapping, Assembly, Alignments, BLAST, wrappers, genetic variation annotation, Statistics, Visualisation |
| Technology | 454, Illumina, ABI Solid, Helicos, Sanger |
| Created at | http://www.clcbio.com |
| Maintained? | Yes |
| Input format(s) | FASTA, FASTQ, A reference genome sequence in fasta format, GenBank, SAM, Illumina Bustard, ELAND, CSFASTA/CSQUAL (ABI SOLiD), and many more. |
| Output format(s) | FASTA, FASTQ, GFF, GenBank, Nexus, and more |
| Software features | Advanced and user-friendly analyses of genomic, transcriptomic and epigenomic NGS data in a graphical user-interface |
| Programming language(s) | Java, C++ |
| Licence | Perpetual, temporal, Free trial license, floating network and terminal server |
| Operating system(s) | Windows, Mac OS X, Linux |
Summary: De novo and reference assembly of Sanger, 454, Solexa, Helicos, and SOLiD data. Alignment in base- and color-space, and mixed mode. Support for paired and single reads. Includes tools for SNP and small indel detection and annotation. Runs on Windows, Mac OS X and Linux.
"Error: no local variable "counter" was set." is not a number.
Link: http://www.clcbio.com/index.php?id=1240 Category: Integrated solutions
