Difference between revisions of "NextGENe"
(adding missing information) |
|||
| Line 1: | Line 1: | ||
{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=de novo and reference assembly of Roche/454, Illumina and SOLiD data. Uses a novel Condensation Assembly Tool approach where reads are joined via "anchors" into mini-contigs before assembly which reduces sequencing errors. Requires Win or MacOS. | |sw summary=de novo and reference assembly of Roche/454, Illumina and SOLiD data. Uses a novel Condensation Assembly Tool approach where reads are joined via "anchors" into mini-contigs before assembly which reduces sequencing errors. Requires Win or MacOS. | ||
| + | |bio domain=SNP/Indel Detection, De novo sequencing, targeted resequencing and transcriptome sequencing, Metagenomics, | ||
| + | |bio tech=Illumina, Roche\454, ABI SOLiD | ||
| + | |created at=SoftGenetics LLC | ||
| + | |maintained=Yes | ||
| + | |input format=Fastq, FASTA, Scarf, FNA\Qual, CSFASTA/CSQUAL (ABI SOLiD), | ||
| + | |sw feature=Unique condensation tool, Data Visualisation, very flexible | ||
| + | |language=C++, | ||
| + | |licence=Commercial | ||
| + | |os=Windows | ||
}} | }} | ||
Link: http://softgenetics.com/NextGENe.html Category: Integrated solutions | Link: http://softgenetics.com/NextGENe.html Category: Integrated solutions | ||
| + | {{Links}} | ||
| + | {{References}} | ||
| + | {{Link box}} | ||
Revision as of 22:03, 14 June 2010
|
Application data |
|
| Biological application domain(s) | SNP/Indel Detection, De novo sequencing, targeted resequencing and transcriptome sequencing, Metagenomics |
|---|---|
| Technology | Illumina, Roche\454, ABI SOLiD |
| Created at | SoftGenetics LLC |
| Maintained? | Yes |
| Input format(s) | Fastq, FASTA, Scarf, FNA\Qual, CSFASTA/CSQUAL (ABI SOLiD) |
| Software features | Unique condensation tool, Data Visualisation, very flexible |
| Programming language(s) | C++ |
| Licence | Commercial |
| Operating system(s) | Windows |
Summary: de novo and reference assembly of Roche/454, Illumina and SOLiD data. Uses a novel Condensation Assembly Tool approach where reads are joined via "anchors" into mini-contigs before assembly which reduces sequencing errors. Requires Win or MacOS.
"Error: no local variable "counter" was set." is not a number.
Link: http://softgenetics.com/NextGENe.html Category: Integrated solutions
Links
none specified
References
none specified
To add a reference for NextGENe, enter the PubMed ID in the field below and click 'Add'.
[ edit box ]
Search for "NextGENe" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
|---|---|---|
