Difference between revisions of "MiRDeep"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=Discovering known and novel miRNAs from deep sequencing data | |sw summary=Discovering known and novel miRNAs from deep sequencing data | ||
− | |bio domain=miRNA, | + | |bio domain=miRNA, |
− | |bio tech= | + | |bio tech=Illumina, 454 |
|created by=Marc Friedländer and Nikolaus Rajewsky Systems Biology group | |created by=Marc Friedländer and Nikolaus Rajewsky Systems Biology group | ||
|created at=Max Delbrück Center, Berlin-Buch | |created at=Max Delbrück Center, Berlin-Buch | ||
|maintained=Yes | |maintained=Yes | ||
− | |language=Perl, | + | |language=Perl, |
}} | }} | ||
The miRDeep package was developed to discover active known or novel miRNAs from deep sequencing data (Solexa/Illumina, 454, ...). The package consists of everything you need to analyze your own deep sequencing data after removal of ligation adapters: a number of scripts to preprocess the mapped data, and the core miRDeep algorithm that will analyze and score these data. | The miRDeep package was developed to discover active known or novel miRNAs from deep sequencing data (Solexa/Illumina, 454, ...). The package consists of everything you need to analyze your own deep sequencing data after removal of ligation adapters: a number of scripts to preprocess the mapped data, and the core miRDeep algorithm that will analyze and score these data. | ||
− | The package is freely available for non-commercial purposes. For commercial purposes, please contact them. | + | The package is freely available for non-commercial purposes. For commercial purposes, please contact them. |
− | |||
{{Links}} | {{Links}} | ||
{{References}} | {{References}} | ||
{{Link box}} | {{Link box}} |
Revision as of 15:48, 13 July 2010
Application data |
|
Created by | Marc Friedländer and Nikolaus Rajewsky Systems Biology group |
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Biological application domain(s) | miRNA |
Technology | Illumina, 454 |
Created at | Max Delbrück Center, Berlin-Buch |
Maintained? | Yes |
Programming language(s) | Perl |
Summary: Discovering known and novel miRNAs from deep sequencing data
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The miRDeep package was developed to discover active known or novel miRNAs from deep sequencing data (Solexa/Illumina, 454, ...). The package consists of everything you need to analyze your own deep sequencing data after removal of ligation adapters: a number of scripts to preprocess the mapped data, and the core miRDeep algorithm that will analyze and score these data.
The package is freely available for non-commercial purposes. For commercial purposes, please contact them.
Links
References
To add a reference for MiRDeep, enter the PubMed ID in the field below and click 'Add'.
Search for "MiRDeep" in the SEQanswers forum / BioStar or:
Web Search | Wiki Sites | Scientific |
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