Difference between revisions of "MiRDeep"
| Line 1: | Line 1: | ||
{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=Discovering known and novel miRNAs from deep sequencing data | |sw summary=Discovering known and novel miRNAs from deep sequencing data | ||
| − | |bio domain=miRNA, | + | |bio domain=miRNA, |
| − | |bio tech= | + | |bio tech=Illumina, 454 |
|created by=Marc Friedländer and Nikolaus Rajewsky Systems Biology group | |created by=Marc Friedländer and Nikolaus Rajewsky Systems Biology group | ||
|created at=Max Delbrück Center, Berlin-Buch | |created at=Max Delbrück Center, Berlin-Buch | ||
|maintained=Yes | |maintained=Yes | ||
| − | |language=Perl, | + | |language=Perl, |
}} | }} | ||
The miRDeep package was developed to discover active known or novel miRNAs from deep sequencing data (Solexa/Illumina, 454, ...). The package consists of everything you need to analyze your own deep sequencing data after removal of ligation adapters: a number of scripts to preprocess the mapped data, and the core miRDeep algorithm that will analyze and score these data. | The miRDeep package was developed to discover active known or novel miRNAs from deep sequencing data (Solexa/Illumina, 454, ...). The package consists of everything you need to analyze your own deep sequencing data after removal of ligation adapters: a number of scripts to preprocess the mapped data, and the core miRDeep algorithm that will analyze and score these data. | ||
| − | The package is freely available for non-commercial purposes. For commercial purposes, please contact them. | + | The package is freely available for non-commercial purposes. For commercial purposes, please contact them. |
| − | |||
{{Links}} | {{Links}} | ||
{{References}} | {{References}} | ||
{{Link box}} | {{Link box}} | ||
Revision as of 15:48, 13 July 2010
|
Application data |
|
| Created by | Marc Friedländer and Nikolaus Rajewsky Systems Biology group |
|---|---|
| Biological application domain(s) | miRNA |
| Technology | Illumina, 454 |
| Created at | Max Delbrück Center, Berlin-Buch |
| Maintained? | Yes |
| Programming language(s) | Perl |
Summary: Discovering known and novel miRNAs from deep sequencing data
"Error: no local variable "counter" was set." is not a number.
The miRDeep package was developed to discover active known or novel miRNAs from deep sequencing data (Solexa/Illumina, 454, ...). The package consists of everything you need to analyze your own deep sequencing data after removal of ligation adapters: a number of scripts to preprocess the mapped data, and the core miRDeep algorithm that will analyze and score these data.
The package is freely available for non-commercial purposes. For commercial purposes, please contact them.
Links
References
To add a reference for MiRDeep, enter the PubMed ID in the field below and click 'Add'.
Search for "MiRDeep" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
|---|---|---|
