Difference between revisions of "NextGENe"
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|created at=SoftGenetics LLC | |created at=SoftGenetics LLC | ||
|maintained=Yes | |maintained=Yes | ||
− | |input format= | + | |input format=FASTQ, FASTA, Scarf, FNA\Qual, CSFASTA/CSQUAL (ABI SOLiD), |
|sw feature=Unique condensation tool, Data Visualisation, very flexible | |sw feature=Unique condensation tool, Data Visualisation, very flexible | ||
|language=C++, | |language=C++, |
Revision as of 15:14, 21 September 2010
Application data |
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Biological application domain(s) | SNP/Indel Detection, De novo sequencing, targeted resequencing and transcriptome sequencing, Metagenomics |
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Technology | Illumina, Roche\454, ABI SOLiD |
Created at | SoftGenetics LLC |
Maintained? | Yes |
Input format(s) | FASTQ, FASTA, Scarf, FNA\Qual, CSFASTA/CSQUAL (ABI SOLiD) |
Software features | Unique condensation tool, Data Visualisation, very flexible |
Programming language(s) | C++ |
Licence | Commercial |
Operating system(s) | Windows |
Summary: de novo and reference assembly of Roche/454, Illumina and SOLiD data. Uses a novel Condensation Assembly Tool approach where reads are joined via "anchors" into mini-contigs before assembly which reduces sequencing errors. Requires Win or MacOS.
"Error: no local variable "counter" was set." is not a number.
Link: http://softgenetics.com/NextGENe.html Category: Integrated solutions
Links
none specified
References
none specified
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