Difference between revisions of "NovelSeq"
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University of Washington | University of Washington | ||
|maintained=Yes | |maintained=Yes | ||
| − | |input format= | + | |input format=DIVET, SAM |
|output format=FASTA | |output format=FASTA | ||
|language=C | |language=C | ||
Revision as of 02:08, 3 November 2010
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Application data |
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| Created by | Iman Hajirasouliha, Fereydoun Hormozdiari, Can Alkan |
|---|---|
| Biological application domain(s) | Structural variants - Novel sequence insertions |
| Principal bioinformatics method(s) | Mapping, Hard Clustering, Combinatorial Optimization, Assembly |
| Technology | Illumina |
| Created at | Simon Fraser University
University of Washington |
| Maintained? | Yes |
| Input format(s) | DIVET, SAM |
| Output format(s) | FASTA |
| Programming language(s) | C |
| Licence | BSC License |
| Operating system(s) | UNIX |
Summary: A computational framework to discover the content and location of long novel sequence insertions using paired-end sequencing data
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Description
A computational framework to discover the content and location of long novel sequence insertions using paired-end sequencing data generated by the next-generation sequencing platforms. Our framework can be built as part of a general sequence analysis pipeline to discover multiple types of genetic variation (SNPs, structural variation, etc.), thus it requires significantly less computational resources than de novo sequence assembly.
Links
- NovelSeq Homepage [ edit link ]
- NovelSeq Related [ edit link ]
- NovelSeq Related [ edit link ]
- NovelSeq Related [ edit link ]
References
To add a reference for NovelSeq, enter the PubMed ID in the field below and click 'Add'.
Search for "NovelSeq" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
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