NovelSeq
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Application data |
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| Created by | Iman Hajirasouliha, Fereydoun Hormozdiari, Can Alkan |
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| Biological application domain(s) | Structural variation, Indel detection |
| Principal bioinformatics method(s) | Read mapping, Sequence assembly, Variant calling |
| Technology | Illumina |
| Created at | Simon Fraser University
University of Washington |
| Maintained? | Yes |
| Input format(s) | DIVET, SAM |
| Output format(s) | FASTA |
| Programming language(s) | C |
| Licence | BSD |
| Operating system(s) | UNIX |
Summary: A computational framework to discover the content and location of long novel sequence insertions using paired-end sequencing data
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Description
A computational framework to discover the content and location of long novel sequence insertions using paired-end sequencing data generated by the next-generation sequencing platforms. Our framework can be built as part of a general sequence analysis pipeline to discover multiple types of genetic variation (SNPs, structural variation, etc.), thus it requires significantly less computational resources than de novo sequence assembly.
Links
- NovelSeq Homepage [ edit link ]
- NovelSeq Related [ edit link ]
- NovelSeq Related [ edit link ]
- NovelSeq Related [ edit link ]
References
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