Difference between revisions of "Figaro"
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|created at=University of Maryland | |created at=University of Maryland | ||
|input format=FASTA, Trace Archive | |input format=FASTA, Trace Archive | ||
| − | |output format=Clipping coordinates (CLR), AMOS Format (AFG), FASTA, QUAL | + | |output format=Clipping coordinates (CLR), AMOS Format (AFG), FASTA, QUAL |
|sw feature=AMOS | |sw feature=AMOS | ||
|language=C++, Perl | |language=C++, Perl | ||
Revision as of 23:50, 28 February 2011
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Application data |
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| Created by | White JR, Roberts M, Yorke JA, Pop M |
|---|---|
| Biological application domain(s) | Sequencing |
| Principal bioinformatics method(s) | k-mer analysis |
| Technology | Sanger |
| Created at | University of Maryland |
| Maintained? | Maybe |
| Input format(s) | FASTA, Trace Archive |
| Output format(s) | Clipping coordinates (CLR), AMOS Format (AFG), FASTA, QUAL |
| Software features | AMOS |
| Programming language(s) | C++, Perl |
| Licence | open-source |
| Operating system(s) | Unix |
Summary: Figaro is a software tool for identifying and removing the vector from raw DNA sequence data without prior knowledge of the vector sequence.
"Error: no local variable "counter" was set." is not a number.
Figaro is a software tool for identifying and removing the vector from raw DNA sequence data without prior knowledge of the vector sequence. By statistically modeling short oligonucleotide frequencies within a set of reads, Figaro is able to determine which DNA words are most likely associated with vector sequence. For a description of Figaro's algorithms please see our paper. You may download Figaro individually, or as part of the AMOS package at SourceForge.
