Difference between revisions of "MrCaNaVaR"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=mrCaNaVaR is a copy number caller that analyzes the next-generation sequence mapping read depth to discover large segmental duplications and deletions. It also has the capability of predicting absolute copy numbers of genomic intervals. | |sw summary=mrCaNaVaR is a copy number caller that analyzes the next-generation sequence mapping read depth to discover large segmental duplications and deletions. It also has the capability of predicting absolute copy numbers of genomic intervals. | ||
| − | |bio domain=Genomics, Personal genomics, | + | |bio domain=Genomics, Personal genomics, |
|bio method=Read depth analysis | |bio method=Read depth analysis | ||
| − | |bio tech=Illumina/Solexa, | + | |bio tech=Illumina/Solexa, Illumina, |
|created by=Can Alkan | |created by=Can Alkan | ||
|created at=University of Washington | |created at=University of Washington | ||
Revision as of 08:44, 18 April 2011
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Application data |
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| Created by | Can Alkan |
|---|---|
| Biological application domain(s) | Genomics, Personal genomics |
| Principal bioinformatics method(s) | Read depth analysis |
| Technology | Illumina/Solexa, Illumina |
| Created at | University of Washington |
| Maintained? | Yes |
| Input format(s) | SAM |
| Output format(s) | BED (copy numbers) |
| Programming language(s) | C |
| Licence | Free for academic |
| Operating system(s) | All POSIX (Linux/BSD/UNIX-like OSes) |
Summary: mrCaNaVaR is a copy number caller that analyzes the next-generation sequence mapping read depth to discover large segmental duplications and deletions. It also has the capability of predicting absolute copy numbers of genomic intervals.
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