MrCaNaVaR

Application data
Created by	Can Alkan
Biological application domain(s)	Genomics, Personal genomics
Principal bioinformatics method(s)	Read depth analysis
Technology	Illumina/Solexa, Illumina
Created at	University of Washington
Maintained?	Yes
Input format(s)	SAM
Output format(s)	BED (copy numbers)
Programming language(s)	C
Licence	Free for academic
Operating system(s)	All POSIX (Linux/BSD/UNIX-like OSes)

Summary: mrCaNaVaR is a copy number caller that analyzes the next-generation sequence mapping read depth to discover large segmental duplications and deletions. It also has the capability of predicting absolute copy numbers of genomic intervals.

"Error: no local variable "counter" was set." is not a number.

Links

• MrCaNaVaR Source code [ edit link ]
• MrCaNaVaR Related [ edit link ]
• MrCaNaVaR Related [ edit link ]

• Add a Link

References

none specified

To add a reference for MrCaNaVaR, enter the PubMed ID in the field below and click 'Add'.

 

[ edit box ]

Search for "MrCaNaVaR" in the SEQanswers forum / BioStar or:

Web Search	Wiki Sites	Scientific
Google. Bioinformatics journals Clusty	WikiPedia MetaBase BioPedia OpenWetWare bifx wiki	PubMed Europe PMC ScientificCommons.org