Difference between revisions of "MUMmerGPU"

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{{Bioinformatics application
 
{{Bioinformatics application
|sw summary=MUMmerGPU is a low cost, ultra-fast sequence alignment program designed to handle the increasing volume of data produced by new, high-throughput sequencing technologies. MUMmerGPU demonstrates that even memory-intensive applications can run significantly faster on the relatively low-cost GPU than on the CPU.
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|sw summary=MUMmerGPU is a low cost, ultra-fast sequence alignment program designed to handle the increasing volume of data produced by HTS.
 
|bio domain=Alignment
 
|bio domain=Alignment
 
|bio method=GPU
 
|bio method=GPU
 
}}
 
}}
 
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MUMmerGPU demonstrates that even memory-intensive applications can run significantly faster on the relatively low-cost GPU than on the CPU.
 
{{Links}}
 
{{Links}}
 
{{References}}
 
{{References}}
 
{{Link box}}
 
{{Link box}}

Revision as of 11:26, 5 September 2011

Application data

Biological application domain(s) Alignment
Principal bioinformatics method(s) GPU
Maintained? Maybe

Summary: MUMmerGPU is a low cost, ultra-fast sequence alignment program designed to handle the increasing volume of data produced by HTS.

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MUMmerGPU demonstrates that even memory-intensive applications can run significantly faster on the relatively low-cost GPU than on the CPU.

Links


References

  1. . 2007. BMC Bioinformatics
  2. . 2009. Parallel Comput


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