Difference between revisions of "MrCaNaVaR"
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|output format=BED (copy numbers) | |output format=BED (copy numbers) | ||
|language=C | |language=C | ||
| − | |licence=Free for academic | + | |licence=Free for academic use, |
| − | |os=POSIX, | + | |os=POSIX, |
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Revision as of 12:24, 5 September 2011
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Application data |
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| Created by | Can Alkan |
|---|---|
| Biological application domain(s) | Genomics, Personal genomics, Copy number estimation |
| Principal bioinformatics method(s) | Read depth analysis |
| Technology | Illumina |
| Created at | University of Washington |
| Maintained? | Yes |
| Input format(s) | SAM |
| Output format(s) | BED (copy numbers) |
| Programming language(s) | C |
| Licence | Free for academic use |
| Operating system(s) | POSIX |
Summary: mrCaNaVaR is a copy number caller that analyzes the next-generation sequence mapping read depth to discover large segmental duplications and deletions. It also has the capability of predicting absolute copy numbers of genomic intervals.
"Error: no local variable "counter" was set." is not a number.
Links
References
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