Difference between revisions of "RTG"
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|sw summary=Comprehensive analysis pipelines powered with unique mapping speed and sensitivity deliver genome center results in variant detection and metagenomic applications with large scale Illumina, Complete Genomics and Roche 454 data sets. | |sw summary=Comprehensive analysis pipelines powered with unique mapping speed and sensitivity deliver genome center results in variant detection and metagenomic applications with large scale Illumina, Complete Genomics and Roche 454 data sets. | ||
|bio domain=Exome and Whole genome variant detection, Metagenomics | |bio domain=Exome and Whole genome variant detection, Metagenomics | ||
| − | |bio method=Mapping, Alignment, Translated nucleotide search, | + | |bio method=Mapping, Alignment, Translated nucleotide search, k-mer analysis, Species frequency estimation, Contaminant filtering, SNP discovery, InDel discovery, |
|bio tech=Illumina, Complete Genomics, Roche 454 | |bio tech=Illumina, Complete Genomics, Roche 454 | ||
|created at=Real Time Genomics, Inc. | |created at=Real Time Genomics, Inc. | ||
Revision as of 15:53, 6 September 2011
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Application data |
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| Biological application domain(s) | Exome and Whole genome variant detection, Metagenomics |
|---|---|
| Principal bioinformatics method(s) | Mapping, Alignment, Translated nucleotide search, k-mer analysis, Species frequency estimation, Contaminant filtering, SNP discovery, InDel discovery |
| Technology | Illumina, Complete Genomics, Roche 454 |
| Created at | Real Time Genomics, Inc. |
| Maintained? | Yes |
| Input format(s) | FASTA, FASTQ, Complete Genomics |
| Output format(s) | SAM, BED, VCF |
| Licence | Commercial, free for individual use |
| Operating system(s) | Linux, Mac OS X, Windows |
Summary: Comprehensive analysis pipelines powered with unique mapping speed and sensitivity deliver genome center results in variant detection and metagenomic applications with large scale Illumina, Complete Genomics and Roche 454 data sets.
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Description
RTG Investigator is easy-to-operate sequence analysis software that delivers to genome center standards. Unparalleled mapping speed and sensitivity powers comprehensive variant detection and metagenomic analysis pipelines that support Illumina, Complete Genomics and Roche 454 data sets. The software is available free for individual use.
Links
- RTG Homepage [ edit link ]
- RTG White Paper [ edit link ]
- RTG HOWTO [ edit link ]
References
To add a reference for RTG, enter the PubMed ID in the field below and click 'Add'.
Search for "RTG" in the SEQanswers forum / BioStar or:
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