RTG
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Application data |
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| Biological application domain(s) | Exome and whole genome variant detection, Metagenomics, SNP detection, Indel detection |
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| Principal bioinformatics method(s) | Read mapping, Sequence alignment, translated nucleotide search, k-mer counting, species frequency estimation, Sequence contamination filtering, Read depth analysis |
| Technology | Illumina, Ion Torrent, Complete Genomics, 454 |
| Created at | Real Time Genomics. |
| Maintained? | Yes |
| Input format(s) | FASTA, FASTQ, SAM, BAM, Complete Genomics |
| Output format(s) | SAM, BAM, BED, VCF |
| Licence | Commercial, free for non-commercial academic research |
| Operating system(s) | Linux, Mac OS X, Windows |
| Contact: | info@realtimegenomics.com |
Summary: Comprehensive analysis pipelines powered with unique mapping speed and sensitivity deliver deep genomic analysis in variant detection and metagenomic applications with Illumina, Ion Torrent, Complete Genomics and Roche 454 data sets.
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Description
RTG Core (upon which RTG Investigator / RTG Variant / RTG Metagenomics / RTG Tools are built) is ready-to-run NGS sequence analysis software that quickly delivers the excellent results necessary for great science. Unparalleled mapping speed and sensitivity powers comprehensive variant detection and metagenomic analysis pipelines that support Illumina, Ion Torrent, Complete Genomics and Roche 454 data. This commercial software is also available free for non-commercial use, with source code on github. The utility package RTG Tools, which includes vcfeval for haplotype-aware variant comparison, is BSD licensed, also on github.
Links
- RTG Homepage [ edit link ]
- RTG White Paper [ edit link ]
- RTG HOWTO [ edit link ]
References
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