Difference between revisions of "Readaligner"
(Created page with '{{Bioinformatics application |bio method=Mapping, }} {{Links}} {{References}} {{Link box}}') |
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{{Bioinformatics application | {{Bioinformatics application | ||
| − | |bio method=Mapping, | + | |sw summary=A tool for mapping (short) DNA reads into reference sequences. |
| + | |bio method=Mapping, | ||
| + | |created at=University of Helsinki, | ||
}} | }} | ||
| + | ===Features=== | ||
| + | * Align reads using either k-mismatches or k-errors (mismatches, insertions and deletions) model. | ||
| + | * Algorithms are based on Burrows-Wheeler transform and backward backtracking. | ||
| + | * Includes a novel data structure called the rotation index that finds alignments with higher number of mismatches in feasible time (but requires a larger index and fixed length query reads). | ||
{{Links}} | {{Links}} | ||
{{References}} | {{References}} | ||
{{Link box}} | {{Link box}} | ||
Revision as of 10:16, 15 September 2011
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Application data |
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| Principal bioinformatics method(s) | Mapping |
|---|---|
| Created at | University of Helsinki |
| Maintained? | Maybe |
Summary: A tool for mapping (short) DNA reads into reference sequences.
"Error: no local variable "counter" was set." is not a number.
Features
- Align reads using either k-mismatches or k-errors (mismatches, insertions and deletions) model.
- Algorithms are based on Burrows-Wheeler transform and backward backtracking.
- Includes a novel data structure called the rotation index that finds alignments with higher number of mismatches in feasible time (but requires a larger index and fixed length query reads).
Links
References
none specified
To add a reference for Readaligner, enter the PubMed ID in the field below and click 'Add'.
[ edit box ]
Search for "Readaligner" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
|---|---|---|
