Difference between revisions of "PRICE"
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| − | |bio method=Assembly, | + | |bio method=Assembly, |
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| + | |maintained=Yes | ||
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<!-- Describe the application in the space below --> | <!-- Describe the application in the space below --> | ||
| − | + | PRICE was designed to address the challenge of assembling viral genomes that comprise a small minority of the reads within ultra-deep, short-read, shotgun metagenomic datasets. PRICE has already enabled the discovery of several novel virus genomes from such complex datasets, and it is also being applied to the de novo assembly of large individual genomes. | |
Revision as of 09:53, 16 September 2011
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Application data |
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| Principal bioinformatics method(s) | Assembly |
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| Created at | University of California at San Francisco |
| Maintained? | Yes |
| Programming language(s) | C++ |
Summary: PRICE uses paired-read information to iteratively increase the size of existing contigs.
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Description
PRICE was designed to address the challenge of assembling viral genomes that comprise a small minority of the reads within ultra-deep, short-read, shotgun metagenomic datasets. PRICE has already enabled the discovery of several novel virus genomes from such complex datasets, and it is also being applied to the de novo assembly of large individual genomes.
Links
References
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