Difference between revisions of "RApiD"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=Tools for processing restriction site associated DNA sequencing. | |sw summary=Tools for processing restriction site associated DNA sequencing. | ||
| + | |bio domain=SNP discovery, | ||
| + | |created by=Eva-Maria Willing | ||
| + | |created at=Max Planck Institute, | ||
| + | |input format=FASTA, FASTQ, | ||
|language=Perl, C++ | |language=Perl, C++ | ||
| + | |licence=GPLv3, | ||
}} | }} | ||
== Description == | == Description == | ||
Revision as of 12:16, 21 September 2011
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Application data |
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| Created by | Eva-Maria Willing |
|---|---|
| Biological application domain(s) | SNP discovery |
| Created at | Max Planck Institute |
| Maintained? | Maybe |
| Input format(s) | FASTA, FASTQ |
| Programming language(s) | Perl, C++ |
| Licence | GPLv3 |
Summary: Tools for processing restriction site associated DNA sequencing.
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Description
Restriction site associated DNA sequencing, or RAD-Seq, is a sequencing strategy in which paired ends are generated in which one end maps to a defined restriction site whereas the other end is generated through random shearing. The restriction site end generates a tag which can be used to cluster the random ends, enabling assembly of those fragments in a targeted manner. If restriction sites are conserved, then RAD-Seq will sample the same regions in multiple individuals. RApiD is a set of tools for working with RAD-Seq data.
Links
References
To add a reference for RApiD, enter the PubMed ID in the field below and click 'Add'.
Search for "RApiD" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
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