Difference between revisions of "SAMtools"
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SAM Tools provide various utilities for manipulating alignments in the [[SAM]] format, including sorting, merging, indexing and generating alignments in a per-position format. See http://samtools.sourceforge.net/ | SAM Tools provide various utilities for manipulating alignments in the [[SAM]] format, including sorting, merging, indexing and generating alignments in a per-position format. See http://samtools.sourceforge.net/ | ||
Revision as of 03:04, 29 January 2012
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Application data |
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| Biological application domain(s) | SNP discovery |
|---|---|
| Principal bioinformatics method(s) | Simulation, Programming Library, Assembly visualization |
| Maintained? | Yes |
| Input format(s) | SAM, BAM |
| Output format(s) | SAM, BAM, VCF, Pileup |
| Software features | Integrated solution, API |
| Programming language(s) | C |
| Licence | MIT |
Summary: Various utilities for processing alignments in the SAM format, including variant calling and alignment viewing.
"Error: no local variable "counter" was set." is not a number.
SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format. See http://samtools.sourceforge.net/
Manual
Links
References
To add a reference for SAMtools, enter the PubMed ID in the field below and click 'Add'.
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Search for "SAMtools" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
|---|---|---|
