Difference between revisions of "RTG"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=Comprehensive analysis pipelines powered with unique mapping speed and sensitivity deliver deep genomic analysis in variant detection and metagenomic applications with Illumina, Ion Torrent, Complete Genomics and Roche 454 data sets. | |sw summary=Comprehensive analysis pipelines powered with unique mapping speed and sensitivity deliver deep genomic analysis in variant detection and metagenomic applications with Illumina, Ion Torrent, Complete Genomics and Roche 454 data sets. | ||
| − | |bio domain=Exome and whole genome variant detection, metagenomics | + | |bio domain=Exome and whole genome variant detection, metagenomics, SNP discovery, InDel discovery |
|bio method=Read mapping, Alignment, translated nucleotide search, k-mer analysis, species frequency estimation, contaminant filtering, SNP discovery, InDel discovery, Read depth analysis | |bio method=Read mapping, Alignment, translated nucleotide search, k-mer analysis, species frequency estimation, contaminant filtering, SNP discovery, InDel discovery, Read depth analysis | ||
|bio tech=Illumina, Ion Torrent, Complete Genomics, 454, | |bio tech=Illumina, Ion Torrent, Complete Genomics, 454, | ||
Revision as of 03:30, 29 March 2012
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Application data |
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| Biological application domain(s) | Exome and whole genome variant detection, metagenomics, SNP discovery, InDel discovery |
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| Principal bioinformatics method(s) | Read mapping, Alignment, translated nucleotide search, k-mer analysis, species frequency estimation, contaminant filtering, SNP discovery, InDel discovery, Read depth analysis |
| Technology | Illumina, Ion Torrent, Complete Genomics, 454 |
| Created at | Real Time Genomics, Inc. |
| Maintained? | Yes |
| Input format(s) | FASTA, FASTQ, SAM/BAM, Complete Genomics |
| Output format(s) | SAM/BAM, BED, VCF |
| Licence | Commercial, free for individual use |
| Operating system(s) | Linux, Mac OS X, Windows |
Summary: Comprehensive analysis pipelines powered with unique mapping speed and sensitivity deliver deep genomic analysis in variant detection and metagenomic applications with Illumina, Ion Torrent, Complete Genomics and Roche 454 data sets.
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Description
RTG Investigator is ready-to-run NGS sequence analysis software that quickly delivers the excellent results necessary for great science. Unparalleled mapping speed and sensitivity powers comprehensive variant detection and metagenomic analysis pipelines that support Illumina, Ion Torrent, Complete Genomics and Roche 454 data. This commercial software is also available free for individual use.
Links
- RTG Homepage [ edit link ]
- RTG White Paper [ edit link ]
- RTG HOWTO [ edit link ]
References
To add a reference for RTG, enter the PubMed ID in the field below and click 'Add'.
Search for "RTG" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
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