Difference between revisions of "DNA Baser"
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|sw summary=Tool for manual and automatic sequence assembly, analysis, editing, sample processing, metadata integration, file format conversion and mutation detection. | |sw summary=Tool for manual and automatic sequence assembly, analysis, editing, sample processing, metadata integration, file format conversion and mutation detection. | ||
|sw logo= | |sw logo= | ||
| − | |bio domain=Structural | + | |bio domain=Structural variation, SNP discovery, |
|bio method=Assembly, Assembly editing, Sequence analysis | |bio method=Assembly, Assembly editing, Sequence analysis | ||
|bio tech=454, Sanger, | |bio tech=454, Sanger, | ||
Revision as of 03:48, 13 July 2012
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Application data |
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| Created by | HeracleSoftware |
|---|---|
| Biological application domain(s) | Structural variation, SNP discovery |
| Principal bioinformatics method(s) | Assembly, Assembly editing, Sequence analysis |
| Technology | 454, Sanger |
| Created at | HeracleSoftware |
| Maintained? | Yes |
| Input format(s) | ABI, FASTA, GenBank, SCF, SEQ, FASTA, TXT, CSV |
| Output format(s) | ABI, FASTA, GenBank, SCF, SEQ, FASTA, TXT |
| Software features | Portable. Does not require installation. Can run from USB stick. Only 3MB. |
| Programming language(s) | Mix |
| Licence | Shareware |
| Operating system(s) | Windows |
Summary: Tool for manual and automatic sequence assembly, analysis, editing, sample processing, metadata integration, file format conversion and mutation detection.
"Error: no local variable "counter" was set." is not a number.
Description
DNA Baser Assembler is unique bioinformatics software for manual and automatic DNA sequence assembly, DNA sequence analysis, automatic sample processing, contig editing, metadata integration, file format conversion and mutation detection.
With DNA Baser Sequence Assembler, you can:
- Assemble multiple DNA samples or align to a reference sequence
- Batch assemble or align in groups of sequences by name
- Automatically end clip (sample low quality end trimming)
- Automatically trim vector sequences
- Import and analyze sequences from ABI, SCF, FASTA and SEQ
- View and edit sequence traces
- Mark specific regions (like discrepancies, low-quality areas in chromatograms) with visible colors and quickly navigate to these regions
- Convert between different file formats (ABI, SCF, FASTA, multi-FASTA, GBK...)
Links
- DNA Baser Publication full text [ edit link ]
- DNA Baser Manual [ edit link ]
- DNA Baser Mailing list [ edit link ]
- DNA Baser Description [ edit link ]
- DNA Baser Binaries [ edit link ]
- DNA Baser HOWTO [ edit link ]
- DNA Baser Related [ edit link ]
References
none specified
To add a reference for DNA Baser, enter the PubMed ID in the field below and click 'Add'.
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