Difference between revisions of "Ngs-pipeline"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=Complete solution for human re-sequencing projects | |sw summary=Complete solution for human re-sequencing projects | ||
| − | |bio domain=Personal genomics, regulatory genomics epigenomics, | + | |bio domain=Personal genomics, regulatory genomics epigenomics, SNP discovery, structural variation discovery, regulatory element annotation, InDel discovery, |
| − | + | |bio method=mapping | |
|bio tech=Illumina, ABI SOLiD, | |bio tech=Illumina, ABI SOLiD, | ||
|created by=Denis Reshetov | |created by=Denis Reshetov | ||
Revision as of 23:01, 21 October 2012
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Application data |
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| Created by | Denis Reshetov |
|---|---|
| Biological application domain(s) | Personal genomics, regulatory genomics epigenomics, SNP discovery, structural variation discovery, regulatory element annotation, InDel discovery |
| Principal bioinformatics method(s) | mapping |
| Technology | Illumina, ABI SOLiD |
| Created at | VIGG RAS |
| Maintained? | Yes |
| Input format(s) | BAM, (Compressed) FASTQ, FASTQ, CSFASTA/CSQUAL (ABI SOLiD) |
| Output format(s) | BAM, VCF |
| Programming language(s) | Perl |
| Licence | GPLv3 |
| Operating system(s) | Linux |
Summary: Complete solution for human re-sequencing projects
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Description
Complete solution for human re-sequencing projects.
Links
References
none specified
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