Difference between revisions of "GRS"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=Reference-based data compression for storage of resequencing data | |sw summary=Reference-based data compression for storage of resequencing data | ||
| − | |bio method= | + | |bio method=File reformatting, |
| + | |created by=Wang C | ||
| + | |created at=Shanghai Jiao Tong University | ||
| + | |maintained=Maybe | ||
| + | |input format=FASTA | ||
| + | |sw feature=sequence compression | ||
| + | |language=C, Bourne shell | ||
| + | |licence=Commercial, Freeware, | ||
| + | |os=Linux, Linux 64, | ||
}} | }} | ||
== Description == | == Description == | ||
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GRS is able to process the genome sequence data without the use of the reference SNPs and other sequence variation information and automatically rebuild the individual genome sequence data using the reference genome sequence. | GRS is able to process the genome sequence data without the use of the reference SNPs and other sequence variation information and automatically rebuild the individual genome sequence data using the reference genome sequence. | ||
| − | + | (The example files contain simple sequence with no FASTA header) | |
Latest revision as of 21:46, 19 December 2015
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Application data |
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| Created by | Wang C |
|---|---|
| Principal bioinformatics method(s) | File reformatting |
| Created at | Shanghai Jiao Tong University |
| Maintained? | Maybe |
| Input format(s) | FASTA |
| Software features | sequence compression |
| Programming language(s) | C, Bourne shell |
| Licence | Commercial, Freeware |
| Operating system(s) | Linux, Linux 64 |
Summary: Reference-based data compression for storage of resequencing data
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Description
GRS is able to process the genome sequence data without the use of the reference SNPs and other sequence variation information and automatically rebuild the individual genome sequence data using the reference genome sequence.
(The example files contain simple sequence with no FASTA header)
Links
References
To add a reference for GRS, enter the PubMed ID in the field below and click 'Add'.
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