Difference between revisions of "CexoR"
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{{Bioinformatics application | {{Bioinformatics application | ||
| − | |sw summary=Strand specific peak-pair calling in ChIP-exo | + | |sw summary=Strand specific peak-pair calling in ChIP-exo data |
|bio domain=ChIP-exo | |bio domain=ChIP-exo | ||
| − | |bio method=Peak calling, | + | |bio method=Peak calling, |
|bio tech=Illumina HiSeq, 454, ABI SOLiD, Ion Torrent, Illumina Solexa, Illumina, | |bio tech=Illumina HiSeq, 454, ABI SOLiD, Ion Torrent, Illumina Solexa, Illumina, | ||
|created by=Pedro Madrigal, | |created by=Pedro Madrigal, | ||
|created at=Wellcome Trust Sanger Institute | |created at=Wellcome Trust Sanger Institute | ||
|maintained=Yes | |maintained=Yes | ||
| − | |email address= | + | |email address=pm12@sanger.ac.uk |
| − | |input format= | + | |input format=Bam, |
| − | |output format=GRanges, R data.frame | + | |output format=GRanges, R data.frame, BED, |
|sw feature=R/Bioconductor package, can run on major computer platforms | |sw feature=R/Bioconductor package, can run on major computer platforms | ||
|language=R | |language=R | ||
| Line 18: | Line 18: | ||
<!-- Describe the application in the space below --> | <!-- Describe the application in the space below --> | ||
| − | An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates | + | An R/Bioconductor package to uncover high-resolution protein-DNA interactions in ChIP-exo biological replicates. |
<!-- --> | <!-- --> | ||
{{Links}} | {{Links}} | ||
{{References}} | {{References}} | ||
{{Link box}} | {{Link box}} | ||
Latest revision as of 15:31, 2 December 2015
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Application data |
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| Created by | Pedro Madrigal |
|---|---|
| Biological application domain(s) | ChIP-exo |
| Principal bioinformatics method(s) | Peak calling |
| Technology | Illumina HiSeq, 454, ABI SOLiD, Ion Torrent, Illumina Solexa, Illumina |
| Created at | Wellcome Trust Sanger Institute |
| Maintained? | Yes |
| Input format(s) | Bam |
| Output format(s) | GRanges, R data.frame, BED |
| Software features | R/Bioconductor package, can run on major computer platforms |
| Programming language(s) | R |
| Licence | GPL-2 + file LICENSE |
| Operating system(s) | Linux, Mac OS X, Windows |
| Contact: | pm12@sanger.ac.uk |
Summary: Strand specific peak-pair calling in ChIP-exo data
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Description
An R/Bioconductor package to uncover high-resolution protein-DNA interactions in ChIP-exo biological replicates.
Links
References
none specified
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