Difference between revisions of "Partek Genomics Suite"
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{{Bioinformatics application | {{Bioinformatics application | ||
| − | |sw summary=Easy to use software providing A to Z analysis for Next | + | |sw summary=Easy to use software providing A to Z analysis for all Next Generation Sequencing and Microarray data. |
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|sw logo=PartekLogo.jpg | |sw logo=PartekLogo.jpg | ||
|bio domain=Genomics, Transcriptomics, Epigenomics, Functional Genomics, RNA-Seq, ChIP-Seq, DNA-Seq, Methyl-Seq, DGE, SAGE, microarray, qPCR, Transcript Quantitation, Alternative Splicing, SNP discovery, small RNA transcriptome | |bio domain=Genomics, Transcriptomics, Epigenomics, Functional Genomics, RNA-Seq, ChIP-Seq, DNA-Seq, Methyl-Seq, DGE, SAGE, microarray, qPCR, Transcript Quantitation, Alternative Splicing, SNP discovery, small RNA transcriptome | ||
Revision as of 16:05, 12 August 2010
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Application data |
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| Created by | Mikaela Gabrielli |
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| Biological application domain(s) | Genomics, Transcriptomics, Epigenomics, Functional Genomics, RNA-Seq, ChIP-Seq, DNA-Seq, Methyl-Seq, DGE, SAGE, microarray, qPCR, Transcript Quantitation, Alternative Splicing, SNP discovery, small RNA transcriptome |
| Principal bioinformatics method(s) | For next generation sequencing data:
Bowtie alignmentProperty "Bioinformatics method" (as page type) with input value "For next generation sequencing data: Bowtie alignment" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., transcript isoform quantitation, new transcript identification, alternative splicing, allele specific expression, protein binding peak detection, motif discovery/analysis, SNP detection Functional genomics approaches: integrated RNA-Seq + microarray analysisProperty "Bioinformatics method" (as page type) with input value "SNP detection Functional genomics approaches: integrated RNA-Seq + microarray analysis" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., integrated ChIP-Seq+RNA-Seq analysis, integrated expression-copy number analysis, integrated transcript + sRNA analysis Biological analysis: analysis on statistical results in biological network context with Gene Ontology and pathway analysisProperty "Bioinformatics method" (as page type) with input value "integrated transcript + sRNA analysis Biological analysis: analysis on statistical results in biological network context with Gene Ontology and pathway analysis" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. |
| Technology | Supporting all microarray and next generation sequencing technologies including...
Affymetrix • Agilent • Applied Biosystems • Illumina • Ion Torrent • NimbleGen • Roche/454 Life Sciences • Custom Arrays |
| Created at | Partek |
| Maintained? | Yes |
Summary: Easy to use software providing A to Z analysis for all Next Generation Sequencing and Microarray data. 200px|right
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Description
A comprehensive suite of advanced statistics, interactive data visualization and biological exploration tools. Unique in supporting all microarray and next generation sequencing technologies including gene expression and digital gene expression (DGE), exon/alternative splicing and RNA-Seq, copy number and association, ChIP-chip, ChIP-seq, and microRNA in a single software package, allowing for analysis of multiple applications in one complete solution.
Links
References
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