Difference between revisions of "Adapter Removal (software)"
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Removes adaptor fragments from raw short read sequence data and outputs data to FASTA format. Output comes in a "non redundant" format compressing all repeated reads into a single read with an abundance count in brackets. | Removes adaptor fragments from raw short read sequence data and outputs data to FASTA format. Output comes in a "non redundant" format compressing all repeated reads into a single read with an abundance count in brackets. | ||
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> <br/> | > <br/> | ||
ACTG <br/> | ACTG <br/> | ||
− | > | + | > <br/> |
− | ACTG | + | ACTG <br/> |
− | Becomes: | + | Becomes: <br/> |
− | >ACTG(2) | + | >ACTG(2)<br/> |
− | ACTG | + | ACTG |
Revision as of 14:07, 14 February 2012
Application data |
|
Created by | Stocks MB, Mapleson D, Moxon S |
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Biological application domain(s) | General bioinformatics (pipeline) |
Principal bioinformatics method(s) | Adapter Removal |
Technology | Illumina, 454 |
Created at | University of East Anglia |
Maintained? | Yes |
Input format(s) | FASTA, FASTQ |
Output format(s) | FASTA |
Software features | Trimming |
Programming language(s) | Java |
Licence | Custom Licence |
Operating system(s) | Linux 64, Windows, Mac OS X |
Summary: Removes adaptor fragments from raw short read sequence data and outputs data to FASTA format.
"Error: no local variable "counter" was set." is not a number.
Description
Part of the sRNA Workbench available at:
http://srna-workbench.cmp.uea.ac.uk
Removes adaptor fragments from raw short read sequence data and outputs data to FASTA format. Output comes in a "non redundant" format compressing all repeated reads into a single read with an abundance count in brackets. For example:
>
ACTG
>
ACTG
Becomes:
>ACTG(2)
ACTG
Links
References
none specified
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