3,481
edits
Changes
no edit summary
|bio domain=SNP discovery,
|maintained=Yes
|email address=dkoboldt@genome.wustl.edu|input format=SAM, BAM, |output format=TXT,
|sw feature=SNP calling
|language=Java,
}}
VarScan is a platform-independent, technology-independent software tool for identifying SNPs and indels in massively parallel sequencing of individual and pooled samples. Given data for a single sample, VarScan identifies and filters germline variants based on read counts, base quality, and allele frequency.
