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|sw summary=De novo and reference assembly SNP and small indel detection and annotation.
|bio domain=Genomics, Whole Genome Resequencing, De-novo assembly, SNP discovery, InDel discovery, ChIP-Seq, RNA-Seq
|bio method=Mapping, Assembly, Alignments, Paired end, Colorspace, |bio tech=454, Illumina, ABI SolidSOLID, Helicos, Sanger,
|created by=Knudsen T, Knudsen B
|created at=http://www.clcbio.com
|input format=FASTA, FASTQ, GenBank, SAM, Illumina Bustard, ELAND, CSFASTA/CSQUAL (ABI SOLiD)
|output format=FASTA, FASTQ, GFF, GenBank, SAM, ACE, Nexus
|sw feature=Advanced and user-friendly analyses of genomic, transcriptomic, and epigenomic NGS data in a graphical user-interface. Wizard driven tools and a freely available developer toolkit, SIMD implementation, multi-threading, hybrid assembly, Integrated solution,
|language=Java, C++
|licence=Perpetual, temporal, floating network and terminal server licenses available. Free, limited time trial and evaluation licenses.
