Changes

|sw summary=De novo and reference assembly of Sanger, 454, Solexa, Helicos, and SOLiD data. Support for paired and single reads. Alignment in base- and color-space, and mixed mode of any of the above including both short and long reads. Includes tools for SNP and small indel detection and annotation. Runs equally well on Windows, Mac OS X and Linux platforms, plus server/enterprise options for scalability of computation and storage.|bio domain=Genomics, Whole Genome Resequencing, De-novo assembly, SNP discovery, InDel discovery, ChIP-Seq, RNA-Seq and much more...|bio method=Mapping, Assembly, and Alignments accelerated with SIMD implementation and multi-threading.Package includes many more common-place bioinformatics tools such as BLAST and Clustal alignments as well., Paired end, Colorspace,

|created by=Thomas Knudsen and Bjarne T, Knudsen et alB

|input format=FASTA, FASTQ, A reference genome sequence in fasta format, GenBank, SAM, Illumina Bustard, ELAND, CSFASTA/CSQUAL (ABI SOLiD), and many more.|output format=FASTA, FASTQ, GFF, GenBank, SAM, ACE, Nexus, and more|sw feature=Advanced and user-friendly analyses of genomic, transcriptomic, and epigenomic NGS data in a graphical user-interface. Wizard driven tools and a freely available developer toolkit., SIMD implementation, multi-threading, hybrid assembly, Integrated solution,

|os=Windows, Mac OS X, Linux, 64 bit

Link: http://www.clcbio.com/index.php?id=1240 Category: Integrated solutions Server/enterprise options for scalability of computation and storage. Package includes many more common-place bioinformatics tools such as BLAST and Clustal alignments as well.