Difference between revisions of "CUDA-EC"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=A scalable parallel algorithm for correcting sequencing errors in high-throughput short-read data so that error-free reads can be available before DNA fragment assembly. | |sw summary=A scalable parallel algorithm for correcting sequencing errors in high-throughput short-read data so that error-free reads can be available before DNA fragment assembly. | ||
| − | |bio method=Sequencing | + | |bio method=Sequencing quality control, GPU |
|created at=School of Computer Engineering, Nanyang Technological University, Singapore | |created at=School of Computer Engineering, Nanyang Technological University, Singapore | ||
|input format=FASTA | |input format=FASTA | ||
Revision as of 05:52, 25 August 2015
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Application data |
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| Principal bioinformatics method(s) | Sequencing quality control, GPU |
|---|---|
| Created at | School of Computer Engineering, Nanyang Technological University, Singapore |
| Maintained? | Maybe |
| Input format(s) | FASTA |
| Output format(s) | FASTA |
| Software features | read error correction |
| Programming language(s) | C |
| Software libraries | CUDA 1.1 |
Summary: A scalable parallel algorithm for correcting sequencing errors in high-throughput short-read data so that error-free reads can be available before DNA fragment assembly.
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