CUDA-EC

Application data
Principal bioinformatics method(s)	Sequencing quality control
Created at	School of Computer Engineering, Nanyang Technological University, Singapore
Maintained?	Maybe
Input format(s)	FASTA
Output format(s)	FASTA
Software features	read error correction
Programming language(s)	C
Software libraries	CUDA 1.1

Summary: A scalable parallel algorithm for correcting sequencing errors in high-throughput short-read data so that error-free reads can be available before DNA fragment assembly.

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Links

• CUDA-EC Source code [ edit link ]

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References

1. . 2010. Journal of Computational Biology

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