Difference between revisions of "ContEst"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=GATK tool to estimate amount of cross-individual contaminating sequence in a dataset | |sw summary=GATK tool to estimate amount of cross-individual contaminating sequence in a dataset | ||
| − | |bio method=Sequencing | + | |bio method=Sequencing quality control, |
|input format=VCF, BAM | |input format=VCF, BAM | ||
|language=Java, | |language=Java, | ||
Revision as of 05:56, 25 August 2015
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Application data |
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| Principal bioinformatics method(s) | Sequencing quality control |
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| Maintained? | Maybe |
| Input format(s) | VCF, BAM |
| Programming language(s) | Java |
| Licence | BSD |
Summary: GATK tool to estimate amount of cross-individual contaminating sequence in a dataset
"Error: no local variable "counter" was set." is not a number.
Description
Cross-contamination of samples in a large sequencing facility is inevitable, even with elaborate safeguards. ContEst estimates the degree of such contamination in a sequencing dataset, using known population allele frequencies and microarray measurements.
Links
References
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