Difference between revisions of "FastQC"
m (Text replace - "Sequencing Quality Control" to "Sequencing quality control") |
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|sw summary=FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. | |sw summary=FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. | ||
|sw logo=File:Fastqc_icon.png | |sw logo=File:Fastqc_icon.png | ||
− | |bio method=Sequencing | + | |bio method=Sequencing quality control, |
|bio tech=Illumina, ABI SOLiD, | |bio tech=Illumina, ABI SOLiD, | ||
|created by=Andrews, SR | |created by=Andrews, SR |
Latest revision as of 06:01, 25 August 2015
Application data |
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Created by | Andrews, SR |
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Principal bioinformatics method(s) | Sequencing quality control |
Technology | Illumina, ABI SOLiD |
Created at | The Babraham Institute |
Maintained? | Yes |
Input format(s) | FASTQ, SAM, BAM |
Output format(s) | HTML |
Programming language(s) | Java |
Licence | GPLv3 |
Operating system(s) | UNIX, Windows |
Summary: FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines.
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FastQC creates a comprehensive report looking at the composition and quality of a high throughput sequence library. It can operate either as an interactive stand-alone application suitable for use by end users receiving sequence data, or in a non-interactive mode which would be suitable for integrating into a sequencing pipeline.
Links
- FastQC Homepage [ edit link ]
- FastQC HOWTO [ edit link ]
- FastQC HOWTO [ edit link ]
References
none specified
To add a reference for FastQC, enter the PubMed ID in the field below and click 'Add'.
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