Difference between revisions of "PIQA"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=PIQA is a quality analysis pipeline designed to examine genomic reads produced by Next Generation Sequencing technology (Illumina G1 Genome Analyzer). It is a set of libraries for R. | |sw summary=PIQA is a quality analysis pipeline designed to examine genomic reads produced by Next Generation Sequencing technology (Illumina G1 Genome Analyzer). It is a set of libraries for R. | ||
− | |bio method=Sequencing | + | |bio method=Sequencing quality control, |
|bio tech=Illumina | |bio tech=Illumina | ||
|input format=bustard, FASTQ, scarf | |input format=bustard, FASTQ, scarf |
Latest revision as of 06:13, 25 August 2015
Application data |
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Principal bioinformatics method(s) | Sequencing quality control |
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Technology | Illumina |
Maintained? | Maybe |
Input format(s) | bustard, FASTQ, scarf |
Programming language(s) | R |
Summary: PIQA is a quality analysis pipeline designed to examine genomic reads produced by Next Generation Sequencing technology (Illumina G1 Genome Analyzer). It is a set of libraries for R.
"Error: no local variable "counter" was set." is not a number.
Produces a bunch of report files and graphics describing run quality. The paper cited describes a base quality score range of -40 to 40, which doesn't seem to correspond to old/new Illumina pipelines or Sanger fastq quality scores. Note that PIQA will not process fastq files using Sanger quality scores.