Difference between revisions of "XMatchView"
| Line 1: | Line 1: | ||
{{Bioinformatics application | {{Bioinformatics application | ||
| − | |sw summary=A visual tool for analyzing cross_match alignments. | + | |sw summary=A visual tool for analyzing cross_match alignments. |
|bio method=Viewer | |bio method=Viewer | ||
|created by=Rene Warren, Steven Jones | |created by=Rene Warren, Steven Jones | ||
| − | |created at=Canada's Michael Smith Genome Sciences Centre, | + | |created at=Canada's Michael Smith Genome Sciences Centre, |
|maintained=No | |maintained=No | ||
| − | |language=Python, | + | |email address=rwarren@bcgsc.ca |
| − | |licence=GPLv3, | + | |language=Python, |
| − | |os=Windows, Linux, | + | |licence=GPLv3, |
| + | |os=Windows, Linux, | ||
}} | }} | ||
==Description== | ==Description== | ||
Latest revision as of 19:32, 3 December 2015
|
Application data |
|
| Created by | Rene Warren, Steven Jones |
|---|---|
| Principal bioinformatics method(s) | Viewer |
| Created at | Canada's Michael Smith Genome Sciences Centre |
| Maintained? | No |
| Programming language(s) | Python |
| Licence | GPLv3 |
| Operating system(s) | Windows, Linux |
| Contact: | rwarren@bcgsc.ca |
Summary: A visual tool for analyzing cross_match alignments.
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Contents
Description
Features
- Easily identify collinear blocks
- Assess the relationship between collinear blocks
- Analyze the sequence identity between repeated segments
- View the repeat frequency
- Launch cross_match directly from a GUI
- Produce publication-quality graphs in a variety of image formats including jpeg, png, gif, tiff, bmp and ps
Links
References
none specified
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