Difference between revisions of "GigaBayes"
m (Text replace - "SNP discovery" to "SNP detection") |
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=A short-read SNP and short-INDEL discovery program. | |sw summary=A short-read SNP and short-INDEL discovery program. | ||
| − | |bio domain=Genomics, SNP | + | |bio domain=Genomics, SNP detection, |
|bio method=SNP calling | |bio method=SNP calling | ||
|maintained=No | |maintained=No | ||
}} | }} | ||
| − | GigaBayes is the working name for our new short-read SNP and short-INDEL discovery program, a re-incarnation of the PolyBayes SNP | + | GigaBayes is the working name for our new short-read SNP and short-INDEL discovery program, a re-incarnation of the PolyBayes SNP detection tool developed by Gabor Marth at Washington University. This version is specifically optimized for the analysis of large numbers (many millions) of high-throughput next-generation sequencer reads, aligned to whole chromosomes of model organism or mammalian genomes. |
Has been superseeded by [[Freebayes]]. | Has been superseeded by [[Freebayes]]. | ||
Latest revision as of 15:37, 19 December 2015
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Application data |
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| Biological application domain(s) | Genomics, SNP detection |
|---|---|
| Principal bioinformatics method(s) | SNP calling |
| Maintained? | No |
Summary: A short-read SNP and short-INDEL discovery program.
"Error: no local variable "counter" was set." is not a number.
GigaBayes is the working name for our new short-read SNP and short-INDEL discovery program, a re-incarnation of the PolyBayes SNP detection tool developed by Gabor Marth at Washington University. This version is specifically optimized for the analysis of large numbers (many millions) of high-throughput next-generation sequencer reads, aligned to whole chromosomes of model organism or mammalian genomes.
Has been superseeded by Freebayes.
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