Difference between revisions of "FusionAnalyser"
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|sw summary=FusionAnalyser is a new graphical, event-driven tool dedicated to the identification of driver fusion rearrangements in human cancer through the analysis of paired-end high-throughput transcriptome sequencing data. | |sw summary=FusionAnalyser is a new graphical, event-driven tool dedicated to the identification of driver fusion rearrangements in human cancer through the analysis of paired-end high-throughput transcriptome sequencing data. | ||
Tested on Illumina. Requires short, paired-end sequences. | Tested on Illumina. Requires short, paired-end sequences. | ||
| − | |bio domain=High-throughput sequencing, | + | |bio domain=High-throughput sequencing, Gene structure, |
|bio tech=Illumina, | |bio tech=Illumina, | ||
|created by=Piazza R | |created by=Piazza R | ||
Latest revision as of 19:27, 19 December 2015
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Application data |
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| Created by | Piazza R |
|---|---|
| Biological application domain(s) | High-throughput sequencing, Gene structure |
| Technology | Illumina |
| Created at | University of Milano-Bicocca, Milan, Italy |
| Maintained? | Yes |
| Input format(s) | SAM/BAM |
| Output format(s) | Graphical |
| Software features | Advanced and user-friendly analysis of RNA-seq data for fusion discovery |
| Programming language(s) | C# |
| Software libraries | NET framework 4 (Windows) or Mono (Linux) |
| Licence | GPLv3 |
| Operating system(s) | Windows, Linux |
Summary: FusionAnalyser is a new graphical, event-driven tool dedicated to the identification of driver fusion rearrangements in human cancer through the analysis of paired-end high-throughput transcriptome sequencing data. Tested on Illumina. Requires short, paired-end sequences.
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Description
FusionAnalyser is a new graphical, event-driven tool dedicated to the identification of driver fusion rearrangements in human cancer through the analysis of paired-end high-throughput transcriptome sequencing data. A fully event-driven graphical interface and a flexible filtering system allow complex analyses to be run in the absence of any a priori programming or scripting knowledge. Therefore, we propose FusionAnalyser as an efficient and robust graphical tool for the identification of functional rearrangements in the context of high-throughput transcriptome sequencing data.
FusionAnalyser has been published in: Nucleic Acids Res. 2012 May 8.
It can be downloaded from: http://www.ngsbicocca.org/html/fusionanalyser.html
Links
References
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