Difference between revisions of "GATK"
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m (Text replace - "Programming Library" to "") |
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|sw summary=The Genome Analysis Toolkit (GATK) is a structured programming framework designed to enable rapid development of efficient and robust analysis tools for next-generation DNA sequencers. The GATK solves the data management challenge by separating data access patterns from analysis algorithms, using the functional programming philosophy of Map/Reduce | |sw summary=The Genome Analysis Toolkit (GATK) is a structured programming framework designed to enable rapid development of efficient and robust analysis tools for next-generation DNA sequencers. The GATK solves the data management challenge by separating data access patterns from analysis algorithms, using the functional programming philosophy of Map/Reduce | ||
|bio domain=SNP detection, | |bio domain=SNP detection, | ||
− | |bio method=Statistical calculation, | + | |bio method=Statistical calculation, , Localised reassembly |
|created by=Broad Institute | |created by=Broad Institute | ||
|maintained=Yes | |maintained=Yes |
Latest revision as of 00:19, 20 December 2015
Application data |
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Created by | Broad Institute |
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Biological application domain(s) | SNP detection |
Principal bioinformatics method(s) | Statistical calculation, Localised reassembly |
Maintained? | Yes |
Input format(s) | SAM |
Output format(s) | VCF |
Programming language(s) | Java, Python |
Summary: The Genome Analysis Toolkit (GATK) is a structured programming framework designed to enable rapid development of efficient and robust analysis tools for next-generation DNA sequencers. The GATK solves the data management challenge by separating data access patterns from analysis algorithms, using the functional programming philosophy of Map/Reduce
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