GATK
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Application data |
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| Created by | Broad Institute |
|---|---|
| Biological application domain(s) | SNP detection |
| Principal bioinformatics method(s) | Statistical calculation, Localised reassembly |
| Maintained? | Yes |
| Input format(s) | SAM |
| Output format(s) | VCF |
| Programming language(s) | Java, Python |
Summary: The Genome Analysis Toolkit (GATK) is a structured programming framework designed to enable rapid development of efficient and robust analysis tools for next-generation DNA sequencers. The GATK solves the data management challenge by separating data access patterns from analysis algorithms, using the functional programming philosophy of Map/Reduce
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