Difference between revisions of "Filter"
m (Text replace - "Filtering" to "Sequence contamination filtering") |
m (Text replace - "General bioinformatics (pipeline)" to "Workflows") |
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=Produces a filtered version of an sRNA dataset, controlled by several user-defined criteria, including sequence length, abundance, complexity, transfer and ribosomal RNA removal. | |sw summary=Produces a filtered version of an sRNA dataset, controlled by several user-defined criteria, including sequence length, abundance, complexity, transfer and ribosomal RNA removal. | ||
− | |bio domain= | + | |bio domain=Workflows, |
|bio method=Sequence contamination filtering, | |bio method=Sequence contamination filtering, | ||
|bio tech=Illumina, 454, | |bio tech=Illumina, 454, |
Latest revision as of 10:41, 11 January 2016
Application data |
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Created by | Stocks MB, Mapleson D, Moxon S |
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Biological application domain(s) | Workflows |
Principal bioinformatics method(s) | Sequence contamination filtering |
Technology | Illumina, 454 |
Created at | University of East Anglia |
Maintained? | Yes |
Input format(s) | FASTA, FASTQ |
Output format(s) | FASTA |
Software features | multi-threading |
Programming language(s) | Java |
Licence | Custom Licence |
Operating system(s) | Linux 64, Windows, Mac OS X |
Summary: Produces a filtered version of an sRNA dataset, controlled by several user-defined criteria, including sequence length, abundance, complexity, transfer and ribosomal RNA removal.
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Description
Part of the UEA sRNA Workbench freely available at:
http://srna-workbench.cmp.uea.ac.uk
Produces a filtered version of an sRNA dataset, controlled by several user-defined criteria, including sequence length, abundance, complexity, transfer and ribosomal RNA removal.
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References
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