Filter

Application data
Created by	Stocks MB, Mapleson D, Moxon S
Biological application domain(s)	Workflows
Principal bioinformatics method(s)	Sequence contamination filtering
Technology	Illumina, 454
Created at	University of East Anglia
Maintained?	Yes
Input format(s)	FASTA, FASTQ
Output format(s)	FASTA
Software features	multi-threading
Programming language(s)	Java
Licence	Custom Licence
Operating system(s)	Linux 64, Windows, Mac OS X

Summary: Produces a filtered version of an sRNA dataset, controlled by several user-defined criteria, including sequence length, abundance, complexity, transfer and ribosomal RNA removal.

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Description

Part of the UEA sRNA Workbench freely available at:

http://srna-workbench.cmp.uea.ac.uk

Produces a filtered version of an sRNA dataset, controlled by several user-defined criteria, including sequence length, abundance, complexity, transfer and ribosomal RNA removal.

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• Filter Manual [ edit link ]

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