Difference between revisions of "MiRProf"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=Determines normalised expression levels of sRNAs matching known miRNAs in miRBase. | |sw summary=Determines normalised expression levels of sRNAs matching known miRNAs in miRBase. | ||
| − | |bio domain= | + | |bio domain=Workflows, |
|bio method=microRNA detection | |bio method=microRNA detection | ||
|bio tech=Illumina, 454 | |bio tech=Illumina, 454 | ||
Latest revision as of 10:42, 11 January 2016
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Application data |
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| Created by | Stocks MB, Mapleson D, Moxon S |
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| Biological application domain(s) | Workflows |
| Principal bioinformatics method(s) | microRNA detection |
| Technology | Illumina, 454 |
| Created at | University of East Anglia |
| Maintained? | Yes |
| Input format(s) | FASTA, FASTQ |
| Output format(s) | CSV |
| Programming language(s) | Java |
| Licence | Custom Licence |
| Operating system(s) | Linux 64, Windows, Mac OS X |
Summary: Determines normalised expression levels of sRNAs matching known miRNAs in miRBase.
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Description
Part of the UEA sRNA Workbench freely available at:
http://srna-workbench.cmp.uea.ac.uk
determines normalised expression levels of sRNAs matching known miRNAs in miRBase. Allows for comparison of miRNA expression levels across multiple samples. Output contains raw, normalised and weighted counts of miRNAs.
Links
References
none specified
To add a reference for MiRProf, enter the PubMed ID in the field below and click 'Add'.
[ edit box ]
Search for "MiRProf" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
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