MiRProf

Application data
Created by	Stocks MB, Mapleson D, Moxon S
Biological application domain(s)	Workflows
Principal bioinformatics method(s)	microRNA detection
Technology	Illumina, 454
Created at	University of East Anglia
Maintained?	Yes
Input format(s)	FASTA, FASTQ
Output format(s)	CSV
Programming language(s)	Java
Licence	Custom Licence
Operating system(s)	Linux 64, Windows, Mac OS X

Summary: Determines normalised expression levels of sRNAs matching known miRNAs in miRBase.

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Description

Part of the UEA sRNA Workbench freely available at:

http://srna-workbench.cmp.uea.ac.uk

determines normalised expression levels of sRNAs matching known miRNAs in miRBase. Allows for comparison of miRNA expression levels across multiple samples. Output contains raw, normalised and weighted counts of miRNAs.

Links

• MiRProf Homepage [ edit link ]
• MiRProf Manual [ edit link ]

• Add a Link

References

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