Difference between revisions of "Strelka"
m (Text replace - "Somatic mutations" to " Genetic variation") |
m (Text replace - "Somatic variant calling" to "Variant calling") |
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|sw summary=Strelka is an analysis package designed to detect somatic SNVs and small indels from the aligned sequencing reads of matched tumor-normal samples. | |sw summary=Strelka is an analysis package designed to detect somatic SNVs and small indels from the aligned sequencing reads of matched tumor-normal samples. | ||
|bio domain= Genetic variation, | |bio domain= Genetic variation, | ||
| − | |bio method= | + | |bio method=Variant calling, |
|created by=Christopher T. Saunders1, Wendy S. W. Wong, Sajani Swamy, Jennifer Becq, Lisa J. Murray, R. Keira Cheetham | |created by=Christopher T. Saunders1, Wendy S. W. Wong, Sajani Swamy, Jennifer Becq, Lisa J. Murray, R. Keira Cheetham | ||
|created at=Illumina | |created at=Illumina | ||
Latest revision as of 10:44, 11 January 2016
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Application data |
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| Created by | Christopher T. Saunders1, Wendy S. W. Wong, Sajani Swamy, Jennifer Becq, Lisa J. Murray, R. Keira Cheetham |
|---|---|
| Biological application domain(s) | Genetic variation |
| Principal bioinformatics method(s) | Variant calling |
| Created at | Illumina |
| Maintained? | Yes |
| Input format(s) | BAM |
| Output format(s) | VCF |
| Software features | Multicore |
| Programming language(s) | Perl |
| Operating system(s) | Linux |
Summary: Strelka is an analysis package designed to detect somatic SNVs and small indels from the aligned sequencing reads of matched tumor-normal samples.
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