Difference between revisions of "TEQC"
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|bio method=Sequencing quality control, | |bio method=Sequencing quality control, | ||
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Latest revision as of 17:42, 4 November 2016
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Application data |
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| Biological application domain(s) | Exome capture |
|---|---|
| Principal bioinformatics method(s) | Sequencing quality control |
| Maintained? | Maybe |
| Programming language(s) | R |
| Interface type(s) | Command line |
| Resource type(s) | Command-line tool |
Summary: Quality assessment of target enrichment experiments.
"Error: no local variable "counter" was set." is not a number.
Description
Quality measures comprise specificity and sensitivity of the capture, enrichment, per-target read coverage and its relation to hybridization probe characteristics, coverage uniformity and reproducibility, and read duplicate analysis. Several diagnostic plots allow visual inspection of the data quality.
Links
References
To add a reference for TEQC, enter the PubMed ID in the field below and click 'Add'.
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