Difference between revisions of "SAMtools"
(Brief description from the SAMtools webpage) |
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|sw feature=Integrated solution, | |sw feature=Integrated solution, | ||
|language=C, Python, Perl, Java, LISP | |language=C, Python, Perl, Java, LISP | ||
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}} | }} | ||
| − | + | SAM Tools provide various utilities for manipulating alignments in the [[SAM]] format, including sorting, merging, indexing and generating alignments in a per-position format. See http://samtools.sourceforge.net/ | |
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Revision as of 15:03, 5 May 2010
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Application data |
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| Biological application domain(s) | SNP discovery |
|---|---|
| Principal bioinformatics method(s) | Simulation, Programming Library |
| Maintained? | Maybe |
| Input format(s) | SAM, BAM |
| Output format(s) | SAM, BAM, VCF |
| Software features | Integrated solution |
| Programming language(s) | C, Python, Perl, Java, LISP |
| Licence | MIT License |
Summary: Various utilities for processing alignments in the SAM format, including variant calling and alignment viewing.
"Error: no local variable "counter" was set." is not a number.
SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format. See http://samtools.sourceforge.net/
