Difference between revisions of "Cufflinks"
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|output format=GTF | |output format=GTF | ||
|licence=Boost | |licence=Boost | ||
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Revision as of 17:10, 25 May 2010
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Application data |
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| Biological application domain(s) | RNA-Seq |
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| Principal bioinformatics method(s) | Assembly |
| Created at | University of Maryland, UC Berkeley, Caltech |
| Maintained? | Maybe |
| Input format(s) | SAM |
| Output format(s) | GTF |
| Licence | Boost |
Summary: Cufflinks assembles transcripts and estimates their abundances in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one.
"Error: no local variable "counter" was set." is not a number.
Links
References
To add a reference for Cufflinks, enter the PubMed ID in the field below and click 'Add'.
[ edit box ]
Search for "Cufflinks" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
|---|---|---|
