Difference between revisions of "NovelSeq"
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|sw summary=A computational framework to discover the content and location of long novel sequence insertions using paired-end sequencing data | |sw summary=A computational framework to discover the content and location of long novel sequence insertions using paired-end sequencing data | ||
|bio domain=Structural variants, InDel discovery | |bio domain=Structural variants, InDel discovery | ||
− | |bio method=Mapping, | + | |bio method=Mapping, Assembly, Variant Calling, InDel discovery, |
|bio tech=Illumina | |bio tech=Illumina | ||
|created by=Iman Hajirasouliha, Fereydoun Hormozdiari, Can Alkan | |created by=Iman Hajirasouliha, Fereydoun Hormozdiari, Can Alkan | ||
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|language=C | |language=C | ||
|licence=BSD License | |licence=BSD License | ||
− | |os=UNIX, | + | |os=UNIX, |
}} | }} | ||
== Description == | == Description == |
Revision as of 15:40, 6 September 2011
Application data |
|
Created by | Iman Hajirasouliha, Fereydoun Hormozdiari, Can Alkan |
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Biological application domain(s) | Structural variants, InDel discovery |
Principal bioinformatics method(s) | Mapping, Assembly, Variant Calling, InDel discovery |
Technology | Illumina |
Created at | Simon Fraser University
University of Washington |
Maintained? | Yes |
Input format(s) | DIVET, SAM |
Output format(s) | FASTA |
Programming language(s) | C |
Licence | BSD License |
Operating system(s) | UNIX |
Summary: A computational framework to discover the content and location of long novel sequence insertions using paired-end sequencing data
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Description
A computational framework to discover the content and location of long novel sequence insertions using paired-end sequencing data generated by the next-generation sequencing platforms. Our framework can be built as part of a general sequence analysis pipeline to discover multiple types of genetic variation (SNPs, structural variation, etc.), thus it requires significantly less computational resources than de novo sequence assembly.
Links
- NovelSeq Homepage [ edit link ]
- NovelSeq Related [ edit link ]
- NovelSeq Related [ edit link ]
- NovelSeq Related [ edit link ]
References
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