Difference between revisions of "MAQ"
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{{Bioinformatics application | {{Bioinformatics application | ||
− | |sw summary=Mapping and Assembly with Qualities (renamed from MAPASS2). Particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has preliminary functions to handle ABI SOLiD data | + | |sw summary=Mapping and Assembly with Qualities (renamed from MAPASS2). Particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has preliminary functions to handle ABI SOLiD data. |
|bio domain=Genomics, SNP discovery, | |bio domain=Genomics, SNP discovery, | ||
|bio method=Mapping, | |bio method=Mapping, |
Revision as of 15:55, 13 September 2011
Application data |
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Created by | Heng Li |
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Biological application domain(s) | Genomics, SNP discovery |
Principal bioinformatics method(s) | Mapping |
Created at | The Wellcome Trust Sanger Institute |
Maintained? | No |
Input format(s) | FASTA, FASTQ |
Output format(s) | Maq |
Programming language(s) | C++, Perl |
Licence | GPL |
Summary: Mapping and Assembly with Qualities (renamed from MAPASS2). Particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has preliminary functions to handle ABI SOLiD data.
"Error: no local variable "counter" was set." is not a number.
MAQ has been superseded by other, faster mapping programs. However, it's still good for some things (SNP calling mainly) and as it's primarily an alignment tool. It also comes with some useful perl scripts for format conversion etc.
Links
References
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