Difference between revisions of "ExomeCopy"
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== Description == | == Description == | ||
Revision as of 11:27, 22 April 2012
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Application data |
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| Created by | Love MI |
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| Biological application domain(s) | Exome and Whole genome variant detection, Copy number estimation |
| Principal bioinformatics method(s) | Copy number estimation, Exome analysis, Hidden Markov Model |
| Created at | Max-Planck-Institute for Molecular Genetics |
| Maintained? | Yes |
| Input format(s) | BAM |
| Software features | simultaneous normalization and segmentation |
| Programming language(s) | R |
| Software libraries | Bioconductor |
| Licence | GPL 2.0+ |
| Operating system(s) | Linux, Windows, Mac OS X |
Summary: CNV detection from exome sequencing read depth
"Error: no local variable "counter" was set." is not a number.
Description
Detection of copy number variants (CNV) from exome sequencing samples, including unpaired samples. The package implements a hidden Markov model which uses positional covariates, such as background read depth and GC-content, to simultaneously normalize and segment the samples into regions of constant copy count.
Links
References
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